Bluehost : Add-on domain is also maindomain.com/addon?

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This is a bluehost question posted by esoteric10 on 02 October 2008

I just purchased an add-on domain, and when I point my browser to the domain, I go to maindomain.com/addon. From what I understand, it may take a few days before the browser would display addon.com, correct?

My question is, once everything is straightened with the DNS propagating, will search engines still see maindomain.com/addon? I do NOT want my add-on site to be associated with my main domain in any way, especially in search engine indexing.

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