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Cpanel shutting down ALL MySQL instances on server

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This is a cpanel question posted by Mr. Bob on 03 February 2010

I have two separate MySQL installs and whenever Cpanel updates MySQL, as it did last night, it will shut down all instances of MySQL on the server. This is a problem for me as the other MySQL instance is not in any way tied to Cpanel. For now, I’ve setup a cron to make sure the other instance is running and if not then auto start it. But obviously I’d like to avoid this issue altogether. Any way I can stop Cpanel from shutting down all instances?

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